{ "_id": "6a1df53e1d7bb097a0a5a53d", "Package": "CRMetrics", "Title": "Cell Ranger Output Filtering and Metrics Visualization", "Version": "0.3.3", "Authors@R": "c(person(\"Rasmus\", \"Rydbirk\", email = \"rrydbirk@bmb.sdu.dk\", role = c(\"aut\", \"cre\")), person(\"Fabienne\", \"Kick\", email=\"fabienne.kick@bric.ku.dk\", role=\"aut\"), person(\"Henrietta\",\"Holze\", email=\"henrietta.holze@petermac.org\", role=\"aut\"), person(\"Xian\", \"Xin\", email=\"xian.xin@bric.ku.dk\", role=\"ctb\"), person(\"Laura\", \"Wolbeck\", email=\"laura.wolbeck@bric.ku.dk\", role=\"aut\"))", "Description": "Sample and cell filtering as well as visualisation of\noutput metrics from 'Cell Ranger' by Grace X.Y. Zheng et al.\n(2017) . 'CRMetrics' allows for easy\nplotting of output metrics across multiple samples as well as\ncomparative plots including statistical assessments of these.\n'CRMetrics' allows for easy removal of ambient RNA using\n'SoupX' by Matthew D Young and Sam Behjati (2020)\n or 'CellBender' by Stephen J\nFleming et al. (2022) . Furthermore, it is\npossible to preprocess data using 'Pagoda2' by Nikolas Barkas\net al. (2021) or\n'Seurat' by Yuhan Hao et al. (2021)\n followed by embedding of cells\nusing 'Conos' by Nikolas Barkas et al. (2019)\n. Finally, doublets can be\ndetected using 'scrublet' by Samuel L. Wolock et al. (2019)\n or 'DoubletDetection' by\nGayoso et al. (2020) . In the end,\ncells are filtered based on user input for use in downstream\napplications.", "License": "GPL-3", "Encoding": "UTF-8", "biocViews": "", "Roxygen": "list(markdown = TRUE)", "URL": "https://github.com/khodosevichlab/CRMetrics", "BugReports": "https://github.com/khodosevichlab/CRMetrics/issues", "Maintainer": "Rasmus Rydbirk ", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libxml2-dev", "Repository": "https://khodosevichlab.r-universe.dev", "Date/Publication": "2026-06-01 19:46:58 UTC", "RemoteUrl": "https://github.com/khodosevichlab/crmetrics", "RemoteRef": "HEAD", "RemoteSha": "1867febcee27f259ad96117421236458ce9f186e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-01 21:03:37 UTC", "User": "root" }, "Author": "Rasmus Rydbirk [aut, cre],\nFabienne Kick [aut],\nHenrietta Holze [aut],\nXian Xin [ctb],\nLaura Wolbeck [aut]", "MD5sum": "bab583c0f97226c2be3738124359c318", "_user": 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