NEWS

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CRMetrics 0.3.3

• Added functionality for 10x Flex, Parse, 10x multiome
• Added 'technology' flag when creating R6 object
• Added plotBarcodeRankPlot
• Added plotRawDepth
• Added 'depth.cutoff.upper' flag for plotEmbedding, plotFilteredCells, filterCms

CRMetrics 0.3.2 (2024-11-07)

• Fixed error in plotFilteredCells
• Added author e-mail (missing)

CRMetrics 0.3.1

• Minor bug fix for issue #52

CRMetrics 0.3.0 (2023-09-01)

• Several minor bug fixes
• Updated createEmbedding upon resolve of https://github.com/kharchenkolab/conos/issues/123
• Updated DESCRIPTION
• Added checks for detectDoublets
• Added possibility for multiple paths for "data.path" argument in initialize
• Changed depth calculation from Conos depth to raw depth, i.e., column sums
• Added plotting palette to object through argument pal
• Fixed bug for filterCms where species was not forwarded to getMitoFraction internally
• Moved adding list of CMs to CRMetrics object from addDetailedMetrics() to addCms() since this is more logical
• detectDoublets can now export Python script with argument export = TRUE
• Added addDoublets function to add doublet results generated with exported Python scripts
• Updated vignette

CRMetrics 0.2.3 (2022-12-14)

• Updated tests and examples to pass CRAN checks

CRMetrics 0.2.2 (2022-11-30)

• Prepared for submission to CRAN

CRMetrics 0.2.1

• Added a NEWS.md file to track changes to the package.